PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_37184_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 423aa    MW: 46151.6 Da    PI: 7.9867
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_37184_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-0884106326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++lCr++ + G C yG++Ck+ H+
  Neem_37184_f_1  84 EKLCRNWVQ-GNCIYGEKCKYLHS 106
                     579******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.1452450IPR000571Zinc finger, CCCH-type
SMARTSM003560.12449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.48381108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-682106IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-583107IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-684106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-785102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.4E-22103272IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.5E-5112151IPR001680WD40 repeat
PfamPF004006.5E-4115151IPR001680WD40 repeat
SuperFamilySSF509981.88E-36116419IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
PROSITE profilePS5008213.516119160IPR001680WD40 repeat
PROSITE profilePS5029412.526119160IPR017986WD40-repeat-containing domain
PROSITE patternPS006780138152IPR019775WD40 repeat, conserved site
SMARTSM0032070191228IPR001680WD40 repeat
PROSITE profilePS5029410.522198383IPR017986WD40-repeat-containing domain
SMARTSM003200.5235272IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.106.7E-21281417IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003206.4E-4290327IPR001680WD40 repeat
PfamPF004000.049292326IPR001680WD40 repeat
SMARTSM003200.64331374IPR001680WD40 repeat
SMARTSM003204.5377414IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDLHAHGGNK RVFNRLGGGP STAENKQKVC NYWRAGKCNR FPCPYLHREL PSPPGAANGT  60
ATKRFANNTW GRLGNNNRSV IKTEKLCRNW VQGNCIYGEK CKYLHSWTLG EGFRLLTQLE  120
GHQKVVSGIT LPSGSDKLYS GSKDETVRVW DCASGQCVGV INIGGEVGCM ISEGPWIFVG  180
VTNFVKAWNT QTNTDLSLSG PVGQVYAMAV GNDLLFAGTQ EGAILAWKFN AATNCFEPAA  240
SLKGHNLAVV SLVVGANRLY SGSMDNSVRL VNKLPTEILQ STVVVWSLET LQCIQTLMEH  300
TSVVMSLLCW DQFLLSCSLD KTIKVWVATE SGNLEVTYTH NEEHGVLTLC GMPDSEGKPV  360
LLCACNDNSV RFYDLPSFSE RGKILSKQEI RAIQLGPGGL FFTGDGTGQV RVWQWCNGPT  420
ATS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B1e-12138377172391F-box/WD repeat protein 7
2ovq_B1e-12138377172391F-box/WD repeat protein 7
2ovr_B1e-12138377172391F-box/WD repeat protein 7
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6351671e-32AJ635167.1 Mangifera indica microsatellite DNA, locus mMiCIR005.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490309.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A067F1Z00.0A0A067F1Z0_CITSI; Uncharacterized protein
STRINGPOPTR_0012s13800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1